SMTL ID : 4g9o.1

Crystal Structure of H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: D.22, R.52, A.55, S.56, N.57, T.81, P.82, G.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.22, A:R.52, A:N.57 Water bridges: A:S.56 EDO.2: 5 residues within 4Å: Chain A: H.26, Q.31, F.70, N.72, D.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.26, A:Q.31, A:N.72, A:N.72, A:D.74 EDO.3: 4 residues within 4Å: Chain A: T.32, K.35, A.36, E.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.36, A:E.39 EDO.4: 3 residues within 4Å: Chain A: G.264, T.265, Q.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.265, A:T.265, A:T.265 EDO.6: 7 residues within 4Å: Chain B: G.191, S.192, R.193, P.195, A.222, T.226, F.228 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.192, B:S.192, B:A.222 EDO.7: 9 residues within 4Å: Chain A: S.56 Chain B: D.22, R.52, S.53, A.55, N.57, Y.117, S.118, G.119 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.56, B:A.55, B:A.55, B:N.57, B:G.119 EDO.8: 1 residues within 4Å: Chain B: R.157 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.157

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain A: D.22, D.23, S.53, N.106 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.22, A:D.23, A:S.53, H2O.2, H2O.5 MG.9: 4 residues within 4Å: Chain B: D.22, D.23, S.53, N.106 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathiharan, Y.K. et al., Dramatic Structural Changes Resulting from the Loss of a Crucial Hydrogen Bond in the Hinge Region Involved in C-Terminal Helix Swapping in SurE: A Survival Protein from Salmonella typhimurium. Plos One (2013)

Release Date

2013-03-13

Peptides

5'/3'-nucleotidase SurE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'/3'-nucleotidase SurE