SMTL ID : 4gaf.1

Crystal structure of EBI-005, a chimera of human IL-1beta and IL-1Ra, bound to human Interleukin-1 receptor type 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: V.212, N.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.232 NAG.2: 3 residues within 4Å: Chain B: N.216, A.305, Y.307 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.216 NAG.3: 5 residues within 4Å: Chain B: Y.105, A.107, G.175, N.176, E.197 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.197 Hydrogen bonds: B:E.197, B:E.197, B:E.197 Water bridges: B:N.176, B:N.176 NAG.4: 3 residues within 4Å: Chain B: W.245, N.246, H.291 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.246

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain B: S.18, E.21, T.193 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.18, B:E.21, B:T.193, B:T.193 Water bridges: B:R.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, J. et al., Design of a superior cytokine antagonist for topical ophthalmic use. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-02-20

Peptides

EBI-005: A
Interleukin-1 receptor type 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

EBI-005

Interleukin-1 receptor type 1

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