SMTL ID : 4gaz.2 (1 other biounit)

Crystal Structure of a Jumonji Domain-containing Protein JMJD5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.149, D.151, H.228 Ligands: OGA.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.149, A:D.151, A:D.151, A:H.228

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 13 residues within 4Å: Chain A: Y.100, W.138, S.146, H.149, D.151, N.155, L.157, K.164, H.228, V.230, S.240, W.242 Ligands: NI.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.138, A:S.146, A:N.155, A:S.240 Salt bridges: A:K.164, A:H.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Crystal Structure of a Jumonji Domain-containing Protein JMJD5. To be Published

Release Date

2013-08-14

Peptides

Lysine-specific demethylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lysine-specific demethylase 8

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