SMTL ID : 4gc0.1

The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to 6-bromo-6-deoxy-D-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 6BG: 6-bromo-6-deoxy-beta-D-glucopyranose(Non-covalent)

6BG.1: 10 residues within 4Å: Chain A: F.24, Q.168, Q.288, Q.289, N.294, L.297, Y.298, W.392, Q.415, N.419 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.168, A:Q.288, A:Q.289, A:N.294, A:N.294, A:W.392, A:N.419

4 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.2: 5 residues within 4Å: Chain A: W.104, I.112, N.113, D.197, Y.201 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.104 Hydrogen bonds: A:N.113, A:Y.201 BNG.3: 4 residues within 4Å: Chain A: L.107, G.108, T.110, S.111 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.107 Hydrogen bonds: A:G.108, A:T.110 BNG.4: 14 residues within 4Å: Chain A: V.295, V.296, A.300, V.303, L.307, A.362, F.363, Q.366, A.367, P.368, G.369, A.372, M.376, Y.445 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.303, A:V.303, A:A.372 Hydrogen bonds: A:A.362, A:A.372 BNG.5: 5 residues within 4Å: Chain A: D.430, S.433, A.437, N.441, F.443 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.433, A:N.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, L. et al., Crystal structure of a bacterial homologue of glucose transporters GLUT1-4. Nature (2012)

Release Date

2012-10-17

Peptides

D-xylose-proton symporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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D-xylose-proton symporter

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