- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- FUL- NAG- FUC: beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- FUL- NAG: beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-FUL-NAG.2: 2 residues within 4Å:- Chain A: N.70
- Chain D: P.32
No protein-ligand interaction detected (PLIP)NAG-FUL-NAG.15: 2 residues within 4Å:- Chain B: N.70
- Chain C: P.32
No protein-ligand interaction detected (PLIP)NAG-FUL-NAG.28: 2 residues within 4Å:- Chain A: P.32
- Chain C: N.70
No protein-ligand interaction detected (PLIP)NAG-FUL-NAG.41: 2 residues within 4Å:- Chain B: P.32
- Chain D: N.70
No protein-ligand interaction detected (PLIP)- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 4 residues within 4Å:- Chain A: Y.8, Q.180, N.181
- Chain D: I.331
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.181
NAG.4: 2 residues within 4Å:- Chain A: N.168, N.170
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.170
NAG.16: 4 residues within 4Å:- Chain B: Y.8, Q.180, N.181
- Chain C: I.331
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.181
NAG.17: 2 residues within 4Å:- Chain B: N.168, N.170
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.170
NAG.29: 4 residues within 4Å:- Chain A: I.331
- Chain C: Y.8, Q.180, N.181
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.181
NAG.30: 2 residues within 4Å:- Chain C: N.168, N.170
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.170
NAG.42: 4 residues within 4Å:- Chain B: I.331
- Chain D: Y.8, Q.180, N.181
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.181
NAG.43: 2 residues within 4Å:- Chain D: N.168, N.170
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.170
- 8 x CA: CALCIUM ION(Non-covalent)
CA.5: 8 residues within 4Å:- Chain A: N.215, L.216, D.219, A.220, D.245, G.263, G.265, G.266
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:N.215, A:D.219, A:D.245, A:G.263, A:G.265, H2O.7
CA.6: 4 residues within 4Å:- Chain A: D.135, T.136
- Chain D: S.364
- Ligands: GOL.7
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.135, H2O.12, H2O.12, H2O.13, H2O.42
CA.18: 8 residues within 4Å:- Chain B: N.215, L.216, D.219, A.220, D.245, G.263, G.265, G.266
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:N.215, B:D.219, B:D.245, B:G.263, B:G.265, H2O.19
CA.19: 4 residues within 4Å:- Chain B: D.135, T.136
- Chain C: S.364
- Ligands: GOL.20
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.135, H2O.25, H2O.25, H2O.25, H2O.30
CA.31: 8 residues within 4Å:- Chain C: N.215, L.216, D.219, A.220, D.245, G.263, G.265, G.266
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:N.215, C:D.219, C:D.245, C:G.263, C:G.265, H2O.31
CA.32: 4 residues within 4Å:- Chain A: S.364
- Chain C: D.135, T.136
- Ligands: GOL.33
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.135, H2O.5, H2O.37, H2O.37, H2O.37
CA.44: 8 residues within 4Å:- Chain D: N.215, L.216, D.219, A.220, D.245, G.263, G.265, G.266
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:N.215, D:D.219, D:D.245, D:G.263, D:G.265, H2O.44
CA.45: 4 residues within 4Å:- Chain B: S.364
- Chain D: D.135, T.136
- Ligands: GOL.46
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.135, H2O.18, H2O.49, H2O.49, H2O.49
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 10 residues within 4Å:- Chain A: V.133, T.134, D.135, T.136
- Chain D: R.336, G.361, I.362, N.363, S.364
- Ligands: CA.6
Ligand excluded by PLIPGOL.8: 13 residues within 4Å:- Chain A: C.48, D.49, L.50, T.51, S.52, C.53, P.326, K.327, G.328, D.329, R.336
- Chain C: E.131, E.132
Ligand excluded by PLIPGOL.9: 10 residues within 4Å:- Chain A: M.15, C.16, E.17, V.18, L.272, E.274, K.275, P.276, A.277, W.278
Ligand excluded by PLIPGOL.10: 2 residues within 4Å:- Chain A: E.17, K.19
Ligand excluded by PLIPGOL.20: 10 residues within 4Å:- Chain B: V.133, T.134, D.135, T.136
- Chain C: R.336, G.361, I.362, N.363, S.364
- Ligands: CA.19
Ligand excluded by PLIPGOL.21: 13 residues within 4Å:- Chain B: C.48, D.49, L.50, T.51, S.52, C.53, P.326, K.327, G.328, D.329, R.336
- Chain D: E.131, E.132
Ligand excluded by PLIPGOL.22: 10 residues within 4Å:- Chain B: M.15, C.16, E.17, V.18, L.272, E.274, K.275, P.276, A.277, W.278
Ligand excluded by PLIPGOL.23: 2 residues within 4Å:- Chain B: E.17, K.19
Ligand excluded by PLIPGOL.33: 10 residues within 4Å:- Chain A: R.336, G.361, I.362, N.363, S.364
- Chain C: V.133, T.134, D.135, T.136
- Ligands: CA.32
Ligand excluded by PLIPGOL.34: 13 residues within 4Å:- Chain B: E.131, E.132
- Chain C: C.48, D.49, L.50, T.51, S.52, C.53, P.326, K.327, G.328, D.329, R.336
Ligand excluded by PLIPGOL.35: 10 residues within 4Å:- Chain C: M.15, C.16, E.17, V.18, L.272, E.274, K.275, P.276, A.277, W.278
Ligand excluded by PLIPGOL.36: 2 residues within 4Å:- Chain C: E.17, K.19
Ligand excluded by PLIPGOL.46: 10 residues within 4Å:- Chain B: R.336, G.361, I.362, N.363, S.364
- Chain D: V.133, T.134, D.135, T.136
- Ligands: CA.45
Ligand excluded by PLIPGOL.47: 13 residues within 4Å:- Chain A: E.131, E.132
- Chain D: C.48, D.49, L.50, T.51, S.52, C.53, P.326, K.327, G.328, D.329, R.336
Ligand excluded by PLIPGOL.48: 10 residues within 4Å:- Chain D: M.15, C.16, E.17, V.18, L.272, E.274, K.275, P.276, A.277, W.278
Ligand excluded by PLIPGOL.49: 2 residues within 4Å:- Chain D: E.17, K.19
Ligand excluded by PLIP- 12 x NO3: NITRATE ION(Non-functional Binders)
NO3.11: 5 residues within 4Å:- Chain A: R.226, T.228, N.232, Y.233, Q.234
No protein-ligand interaction detected (PLIP)NO3.12: 3 residues within 4Å:- Chain A: T.183, V.184, Q.185
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.185
NO3.13: 4 residues within 4Å:- Chain A: F.137, Y.177, V.184, W.187
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.187
- Water bridges: A:R.175
NO3.24: 5 residues within 4Å:- Chain B: R.226, T.228, N.232, Y.233, Q.234
No protein-ligand interaction detected (PLIP)NO3.25: 3 residues within 4Å:- Chain B: T.183, V.184, Q.185
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.185
NO3.26: 4 residues within 4Å:- Chain B: F.137, Y.177, V.184, W.187
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.187
- Water bridges: B:R.175
NO3.37: 5 residues within 4Å:- Chain C: R.226, T.228, N.232, Y.233, Q.234
No protein-ligand interaction detected (PLIP)NO3.38: 3 residues within 4Å:- Chain C: T.183, V.184, Q.185
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.185
NO3.39: 4 residues within 4Å:- Chain C: F.137, Y.177, V.184, W.187
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:W.187
- Water bridges: C:R.175
NO3.50: 5 residues within 4Å:- Chain D: R.226, T.228, N.232, Y.233, Q.234
No protein-ligand interaction detected (PLIP)NO3.51: 3 residues within 4Å:- Chain D: T.183, V.184, Q.185
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.185
NO3.52: 4 residues within 4Å:- Chain D: F.137, Y.177, V.184, W.187
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:W.187
- Water bridges: D:R.175
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, X. et al., Crystal structures of two subtype N10 neuraminidase-like proteins from bat influenza A viruses reveal a diverged putative active site. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-09-26
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
FD
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- FUL- NAG- FUC: beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- FUL- NAG: beta-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 12 x NO3: NITRATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, X. et al., Crystal structures of two subtype N10 neuraminidase-like proteins from bat influenza A viruses reveal a diverged putative active site. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-09-26
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
FD
F