- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x NA: SODIUM ION(Non-functional Binders)
NA.5: 2 residues within 4Å:- Chain A: Y.376
- Ligands: 1PE.9
No protein-ligand interaction detected (PLIP)NA.6: 3 residues within 4Å:- Chain A: Q.10, A.11
- Ligands: 1PE.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.11
NA.7: 2 residues within 4Å:- Chain A: W.53
- Ligands: 1PE.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.53
NA.12: 1 residues within 4Å:- Ligands: 1PE.13
No protein-ligand interaction detected (PLIP)NA.19: 2 residues within 4Å:- Chain B: Y.376
- Ligands: 1PE.23
No protein-ligand interaction detected (PLIP)NA.20: 3 residues within 4Å:- Chain B: Q.10, A.11
- Ligands: 1PE.24
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.11
NA.21: 2 residues within 4Å:- Chain B: W.53
- Ligands: 1PE.22
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.53
NA.26: 1 residues within 4Å:- Ligands: 1PE.27
No protein-ligand interaction detected (PLIP)- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.8: 4 residues within 4Å:- Chain A: D.52, W.53, A.380
- Ligands: NA.7
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.52
1PE.9: 6 residues within 4Å:- Chain A: M.40, Y.83, F.124, F.297, Y.376
- Ligands: NA.5
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Y.83
1PE.10: 7 residues within 4Å:- Chain A: P.9, Q.10, A.11, R.335, K.363, G.364
- Ligands: NA.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.11, A:R.335
1PE.13: 5 residues within 4Å:- Chain A: D.371, H.381, D.385, Y.386
- Ligands: NA.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.385
1PE.22: 4 residues within 4Å:- Chain B: D.52, W.53, A.380
- Ligands: NA.21
No protein-ligand interaction detected (PLIP)1PE.23: 6 residues within 4Å:- Chain B: M.40, Y.83, F.124, F.297, Y.376
- Ligands: NA.19
No protein-ligand interaction detected (PLIP)1PE.24: 7 residues within 4Å:- Chain B: P.9, Q.10, A.11, R.335, K.363, G.364
- Ligands: NA.20
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.11, B:R.335
1PE.27: 5 residues within 4Å:- Chain B: D.371, H.381, D.385, Y.386
- Ligands: NA.26
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.385
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.11: 19 residues within 4Å:- Chain A: P.35, P.36, L.37, T.38, G.73, Q.115, H.192, N.195, R.244, P.296, F.297, G.325, N.326, Y.347, G.348, R.349, F.375, Y.376
- Ligands: 0WU.14
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:L.37, A:F.297, A:R.349, A:F.375, A:Y.376
- Hydrogen bonds: A:P.36, A:T.38, A:G.73, A:Q.115, A:Q.115, A:N.195, A:R.244, A:R.244, A:N.326, A:G.348, A:R.349
- Water bridges: A:E.300, A:G.325, A:F.327, A:R.349, A:F.350
- Salt bridges: A:R.349
FMN.25: 19 residues within 4Å:- Chain B: P.35, P.36, L.37, T.38, G.73, Q.115, H.192, N.195, R.244, P.296, F.297, G.325, N.326, Y.347, G.348, R.349, F.375, Y.376
- Ligands: 0WU.28
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:L.37, B:F.297, B:R.349, B:F.375, B:Y.376
- Hydrogen bonds: B:P.36, B:T.38, B:T.38, B:G.73, B:Q.115, B:Q.115, B:N.195, B:R.244, B:R.244, B:N.326, B:G.348, B:R.349
- Water bridges: B:G.325, B:F.327, B:R.349, B:R.349, B:F.350
- Salt bridges: B:R.349
- 2 x 0WU: (5S)-2-methyl-5-(prop-1-en-2-yl)cyclohex-2-en-1-one(Non-covalent)
0WU.14: 11 residues within 4Å:- Chain A: T.38, G.73, Y.83, I.117, H.192, N.195, Y.197, F.251, P.296, Y.376
- Ligands: FMN.11
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:T.38, A:Y.83, A:I.117, A:F.251, A:P.296
- Hydrogen bonds: A:N.195
0WU.28: 11 residues within 4Å:- Chain B: T.38, G.73, Y.83, I.117, H.192, N.195, Y.197, F.251, P.296, Y.376
- Ligands: FMN.25
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:T.38, B:Y.83, B:I.117, B:F.251, B:P.296
- Hydrogen bonds: B:N.195
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pompeu, Y.A. et al., X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase. ACS CATALYSIS (2013)
- Release Date
- 2012-08-29
- Peptides
- NADPH dehydrogenase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x NA: SODIUM ION(Non-functional Binders)
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 2 x 0WU: (5S)-2-methyl-5-(prop-1-en-2-yl)cyclohex-2-en-1-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pompeu, Y.A. et al., X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase. ACS CATALYSIS (2013)
- Release Date
- 2012-08-29
- Peptides
- NADPH dehydrogenase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A