SMTL ID : 4ger.1 (1 other biounit)

Crystal structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.135, H.139, Y.150, E.159 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.135, A:H.139, A:E.159, H2O.1

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.129, D.131, Q.170, D.178, D.179 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.129, A:D.131, A:D.178, H2O.1, H2O.5 CA.3: 3 residues within 4Å: Chain A: D.53, D.55, V.57 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.53, A:V.57, H2O.3, H2O.3, H2O.3 CA.4: 4 residues within 4Å: Chain A: Y.181, T.182, I.185, D.188 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.181, A:I.185, A:D.188, H2O.3, H2O.8

1 x THR: THREONINE(Non-covalent)

THR.5: 9 residues within 4Å: Chain A: N.105, A.106, F.126, H.135, E.136, L.190, R.191, H.219 Ligands: LYS.6 7 PLIP interactions: 5 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:F.126, A:L.190 Hydrogen bonds: A:E.136, A:R.191, A:R.191, K.6 Water bridges: T.5

1 x LYS: LYSINE(Non-covalent)

LYS.6: 5 residues within 4Å: Chain A: N.104, N.105, F.123, H.219 Ligands: THR.5 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:N.104, A:N.105, A:N.105 Salt bridges: A:H.219 Water bridges: T.5, T.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruf, A. et al., Structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-01-02

Peptides

Gentlyase metalloprotease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gentlyase metalloprotease

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