SMTL ID : 4gez.1 (2 other biounits)

Structure of a neuraminidase-like protein from A/bat/Guatemala/164/2009

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain A: N.196, T.198, I.200, I.240 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.200 Hydrogen bonds: A:I.240

1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUL.2: 3 residues within 4Å: Chain B: N.196, T.198, I.240 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.240

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: N.220, D.224, D.250, G.268, G.270, G.271 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.220, A:D.224, A:D.250, A:G.268, A:G.270 CA.6: 6 residues within 4Å: Chain B: N.220, D.224, A.225, D.250, G.268, G.270 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.220, B:D.224, B:D.250, B:G.268, B:G.270 CA.8: 5 residues within 4Å: Chain C: N.220, D.224, D.250, G.268, G.270 6 PLIP interactions: 5 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:N.220, C:D.224, C:D.250, C:G.268, C:G.270, H2O.5 CA.10: 5 residues within 4Å: Chain D: N.220, D.224, D.250, G.268, G.270 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:N.220, D:D.224, D:D.250, D:G.268, H2O.7

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)(Non-functional Binders)

NAG.4: 1 residues within 4Å: Chain A: N.75 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: Y.13, Q.185, N.186 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.13 Hydrogen bonds: A:Q.185 NAG.7: 3 residues within 4Å: Chain B: Y.13, Q.185, N.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.185, B:N.186 NAG.9: 2 residues within 4Å: Chain C: N.196, T.198 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.198 Water bridges: C:T.198 NAG.11: 1 residues within 4Å: Chain D: N.175 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.175 NAG.12: 4 residues within 4Å: Chain D: N.196, T.198 Ligands: NAG.13, FUC.14 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.196, D:T.198 NAG.13: 2 residues within 4Å: Ligands: NAG.12, FUC.14 No protein-ligand interaction detected (PLIP)

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.14: 3 residues within 4Å: Chain D: I.240 Ligands: NAG.12, NAG.13 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:I.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Crystal structures of two subtype N10 neuraminidase-like proteins from bat influenza A viruses reveal a diverged putative active site. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-26

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Neuraminidase

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