SMTL ID : 4gfc.1

N-terminal coiled-coil dimer of C.elegans SAS-6, crystal form B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: A.8, D.11 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.11 EDO.2: 3 residues within 4Å: Chain A: V.87, V.95, H.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.99 EDO.3: 4 residues within 4Å: Chain A: E.42, F.89, D.90, P.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.42, A:E.42, A:F.89 EDO.4: 7 residues within 4Å: Chain A: L.14, I.15, L.100, C.102, T.105, I.107 Ligands: PG4.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.15 EDO.9: 3 residues within 4Å: Chain A: Y.32, R.59, D.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.32, A:R.59, A:R.59 EDO.10: 6 residues within 4Å: Chain A: L.9, F.10, D.11, Q.12, I.97 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.11, A:D.11 EDO.11: 3 residues within 4Å: Chain A: H.83, K.130, K.132 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.82, A:K.130, A:K.132 EDO.12: 2 residues within 4Å: Chain B: L.85, V.87 No protein-ligand interaction detected (PLIP)

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 5 residues within 4Å: Chain A: H.99, C.102, T.105, S.124, T.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.105, A:S.124 IMD.6: 4 residues within 4Å: Chain A: K.54, H.139, V.141, H.145 No protein-ligand interaction detected (PLIP)

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.7: 3 residues within 4Å: Chain A: E.106, N.108, E.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.106, A:N.108 PG4.8: 4 residues within 4Å: Chain A: L.14, I.15, K.103 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilbert, M. et al., Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-06-19

Peptides

Spindle assembly abnormal protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spindle assembly abnormal protein 6