SMTL ID : 4gfj.1

Crystal structure of Topo-78, an N-terminal 78kDa fragment of topoisomerase V

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: V.133, K.134 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.133, A:K.134 GOL.2: 4 residues within 4Å: Chain A: E.221, D.384, F.431, G.432 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.431 GOL.3: 7 residues within 4Å: Chain A: R.108, R.131, V.133, R.144, R.293, S.322 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.108, A:R.131, A:R.293, A:S.322

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: E.161, H.246 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.161, A:E.161, A:H.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajan, R. et al., Identification of one of the apurinic/apyrimidinic lyase active sites of topoisomerase V by structural and functional studies. Nucleic Acids Res. (2013)

Release Date

2012-12-05

Peptides

Topoisomerase V: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Topoisomerase V