SMTL ID : 4gfn.1

Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SUY: (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine(Non-covalent)

SUY.1: 15 residues within 4Å: Chain A: I.28, N.31, S.32, E.35, V.56, D.58, R.61, G.62, I.63, P.64, V.79, G.102, S.105, T.150, V.152 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.28, A:N.31, A:I.63, A:T.150, A:V.152 Hydrogen bonds: A:D.58 Water bridges: A:N.31, A:G.60, A:R.61, A:K.121, A:T.150 pi-Cation interactions: A:R.61 Halogen bonds: A:S.105

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: A.36, N.183, R.184, L.186 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.37, A:K.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-02-13

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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