SMTL ID : 4ggc.1

Structural Analysis of Human Cdc20 Supports Multi-site Degron Recognition by APC/C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 9 residues within 4Å: Chain A: L.17, D.18, A.19, P.20, V.41, L.43, Y.48, W.50, I.57 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.41, A:L.43, A:Y.48, A:W.50, A:I.57 Hydrogen bonds: A:D.18 Water bridges: A:D.18 MRD.2: 10 residues within 4Å: Chain A: V.38, L.49, W.50, S.51, D.56, I.57, L.58, W.75, V.96, Q.97 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.96 Water bridges: A:S.54 MRD.3: 10 residues within 4Å: Chain A: N.118, I.121, H.133, V.143, A.144, W.158, S.179, A.180, P.181, W.186 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.121 MRD.4: 2 residues within 4Å: Chain A: P.294, D.295 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.294 Water bridges: A:D.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, W. et al., Structural analysis of human Cdc20 supports multisite degron recognition by APC/C. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-07

Peptides

Cell division cycle protein 20 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division cycle protein 20 homolog