SMTL ID : 4ggk.1

Crystal structure of Zucchini from mouse (mZuc / PLD6 / MitoPLD) bound to tungstate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.20, C.37, C.39, H.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.37, A:C.39, A:H.43 ZN.3: 4 residues within 4Å: Chain B: C.20, C.37, C.39, H.43 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:C.37, B:C.39, B:H.43

2 x WO4: TUNGSTATE(VI)ION(Non-covalent)

WO4.2: 9 residues within 4Å: Chain A: F.67, H.124, K.126, N.141 Chain B: F.67, H.124, K.126, N.141 Ligands: WO4.4 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.126, A:N.141, B:H.124, B:K.126, B:N.141 WO4.4: 9 residues within 4Å: Chain A: F.67, H.124, K.126, N.141 Chain B: F.67, H.124, K.126, N.141 Ligands: WO4.2 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.124, A:K.126, A:N.141, B:K.126, B:N.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ipsaro, J.J. et al., The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis. Nature (2012)

Release Date

2012-10-10

Peptides

Mitochondrial cardiolipin hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mitochondrial cardiolipin hydrolase

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