SMTL ID : 4ggl.1

Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x CJC: 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)pyrido[2,3-b]pyrazin-2(1H)-one(Non-covalent)

CJC.1: 14 residues within 4Å: Chain A: I.28, N.31, S.32, E.35, D.58, R.61, G.62, I.63, P.64, V.79, G.102, S.105, T.150, V.152 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.28, A:I.63, A:T.150, A:V.152 Hydrogen bonds: A:N.31, A:D.58, A:R.61 Water bridges: A:E.35, A:R.61, A:K.121, A:T.150, A:T.150 pi-Cation interactions: A:R.61 Halogen bonds: A:S.105

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: A.36, N.183, R.184, L.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.183, A:L.186 Water bridges: A:A.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-02-13

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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