SMTL ID : 4gh9.1

Crystal structure of Marburg virus VP35 RNA binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: R.85, R.88, T.89 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.85, A:T.89 Salt bridges: A:R.88 ACT.2: 4 residues within 4Å: Chain A: L.33, T.36, H.37, H.70 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.33 Salt bridges: A:H.37, A:H.70 ACT.3: 2 residues within 4Å: Chain A: V.120, P.121 No protein-ligand interaction detected (PLIP) ACT.4: 2 residues within 4Å: Chain A: P.39, G.40 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.39 Hydrogen bonds: A:G.40 ACT.5: 4 residues within 4Å: Chain A: R.88, D.127, K.128, G.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.128 Salt bridges: A:R.88 ACT.6: 2 residues within 4Å: Chain A: P.110, R.111 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.110 Hydrogen bonds: A:R.111 Water bridges: A:V.109, A:V.109, A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bale, S. et al., Marburg Virus VP35 Can Both Fully Coat the Backbone and Cap the Ends of dsRNA for Interferon Antagonism. Plos Pathog. (2012)

Release Date

2012-08-15

Peptides

Polymerase cofactor VP35: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase cofactor VP35

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