- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
FE2.1: 4 residues within 4Å:- Chain A: H.155, H.200, H.214, E.267
6 PLIP interactions:3 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.155, A:H.214, A:E.267, H2O.15, H2O.15, H2O.15
FE2.5: 4 residues within 4Å:- Chain B: H.155, H.200, H.214, E.267
6 PLIP interactions:3 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:H.155, B:H.214, B:E.267, H2O.35, H2O.35, H2O.35
FE2.10: 4 residues within 4Å:- Chain C: H.155, H.200, H.214, E.267
6 PLIP interactions:3 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:H.155, C:H.214, C:E.267, H2O.51, H2O.51, H2O.51
FE2.14: 4 residues within 4Å:- Chain D: H.155, H.200, H.214, E.267
6 PLIP interactions:3 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:H.155, D:H.214, D:E.267, H2O.68, H2O.68, H2O.68
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 3 residues within 4Å:- Chain A: R.243, H.248, R.293
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain B: R.243, H.248, R.293
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain C: R.243, H.248, R.293
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain D: R.243, H.248, R.293
Ligand excluded by PLIP- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: R.243, G.244, Y.255, N.298, P.299, V.301
- Chain C: N.298
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:G.244, A:G.244, A:Y.255, A:P.299, C:N.298
- Water bridges: A:N.298
GOL.4: 5 residues within 4Å:- Chain A: I.283, T.284, W.285, D.289
- Chain C: R.236
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:T.284
- Water bridges: A:N.286, C:R.236, C:R.236
GOL.8: 7 residues within 4Å:- Chain B: R.243, G.244, Y.255, N.298, P.299, V.301
- Chain D: N.298
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:G.244, B:Y.255, B:D.294, D:N.298
- Water bridges: B:N.298
GOL.9: 3 residues within 4Å:- Chain B: I.283, T.284, W.285
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain D- Water bridges: B:T.284, B:N.286, D:R.236, D:R.236
GOL.12: 3 residues within 4Å:- Chain C: I.283, T.284, W.285
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Water bridges: A:R.236, C:N.286
GOL.13: 7 residues within 4Å:- Chain A: N.298
- Chain C: R.243, G.244, Y.255, N.298, P.299, V.301
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:G.244, C:Y.255, C:D.294, A:N.298
- Water bridges: C:N.298
GOL.16: 3 residues within 4Å:- Chain D: I.283, T.284, W.285
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:W.285
- Water bridges: D:N.286, D:N.286
GOL.17: 7 residues within 4Å:- Chain B: N.298
- Chain D: R.243, G.244, Y.255, N.298, P.299, V.301
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:G.244, D:Y.255, D:D.294, B:N.298
- Water bridges: D:D.294, D:N.298
GOL.18: 6 residues within 4Å:- Chain D: Q.182, D.183, D.184, T.284, W.285, N.286
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:D.183, D:D.184, D:N.286
- Water bridges: D:T.284, D:T.284, D:N.286
- 1 x CA: CALCIUM ION(Non-covalent)
CA.6: 2 residues within 4Å:- Chain B: D.184, E.185
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.184, B:E.185, H2O.19
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kovaleva, E.G. et al., Structural basis for the role of tyrosine 257 of homoprotocatechuate 2,3-dioxygenase in substrate and oxygen activation. Biochemistry (2012)
- Release Date
- 2012-10-31
- Peptides
- Homoprotocatechuate 2,3-dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kovaleva, E.G. et al., Structural basis for the role of tyrosine 257 of homoprotocatechuate 2,3-dioxygenase in substrate and oxygen activation. Biochemistry (2012)
- Release Date
- 2012-10-31
- Peptides
- Homoprotocatechuate 2,3-dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D