SMTL ID : 4ghl.1

Structural Basis for Marburg virus VP35 mediate immune evasion mechanisms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-tetramer

Ligands

11 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: R.105, K.132 Chain C: N.65 Chain D: C.7, A.8 No protein-ligand interaction detected (PLIP) MG.2: 5 residues within 4Å: Chain A: F.22, L.25, G.27, N.28, H.33 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.25, A:G.27, H2O.3 MG.5: 3 residues within 4Å: Chain B: L.25, P.26, G.27 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:L.25, B:G.27, H2O.3, H2O.5 MG.10: 2 residues within 4Å: Chain C: K.91, E.124 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.124 MG.13: 2 residues within 4Å: Chain D: C.17, U.18 No protein-ligand interaction detected (PLIP) MG.14: 1 residues within 4Å: Chain D: U.18 No protein-ligand interaction detected (PLIP) MG.15: 1 residues within 4Å: Chain D: U.16 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain E: A.10, U.11 Chain F: G.27 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain E: C.13, U.14 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain E: U.14, G.15 No protein-ligand interaction detected (PLIP) MG.19: 2 residues within 4Å: Chain F: F.93, Q.94 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.89 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: Y.44 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: Q.37 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: K.45 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: R.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.89 Water bridges: A:R.89 EDO.9: 3 residues within 4Å: Chain B: R.105, A.106, R.129 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.106, B:R.129, B:R.129 EDO.11: 2 residues within 4Å: Chain C: I.88, R.89 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.89, C:R.89 Water bridges: C:R.89 EDO.12: 4 residues within 4Å: Chain C: N.29, P.97, R.98, P.99 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.98 Water bridges: C:V.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramanan, P. et al., Structural basis for Marburg virus VP35-mediated immune evasion mechanisms. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-28

Peptides

Polymerase cofactor VP35: ABCF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

F
D

Polymerase cofactor VP35