SMTL ID : 4gi8.1 (1 other biounit)

Crystal structure of the MUTB F164L mutant from crystals soaked with the substrate sucrose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.22, N.24, D.26, I.28, D.30 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.22, A:D.26, A:I.28, A:D.30, H2O.8

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: T.208, L.214, Q.218, A.225, Q.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.218, A:A.225 Water bridges: A:P.212 GOL.3: 9 residues within 4Å: Chain A: D.61, Y.64, H.104, F.145, D.200, H.326, D.327, R.414, R.418 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.61, A:H.104, A:H.326, A:R.414, A:R.414, A:R.418 GOL.4: 6 residues within 4Å: Chain A: N.221, F.222, A.223, L.289, R.291 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.221, A:A.223, A:R.291 GOL.5: 5 residues within 4Å: Chain A: A.525, E.526, T.527, P.537, A.539 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.527, A:T.527, A:T.527 GOL.6: 5 residues within 4Å: Chain A: T.227, Q.228, G.229, Q.262, L.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.229 GOL.7: 7 residues within 4Å: Chain A: I.255, F.256, G.257, A.258, F.280, R.284 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.255, A:G.257, A:F.280 GOL.8: 8 residues within 4Å: Chain A: I.306, V.309, D.310, N.319, F.321, Q.357, R.358, Y.481 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.306, A:R.358, A:R.358 Water bridges: A:D.310

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.9: 5 residues within 4Å: Chain A: F.144, E.254, F.256, R.284, D.327 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.254, A:R.284 Water bridges: A:R.284, A:R.284, A:N.328, A:E.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lipski, A. et al., Mutations inducing an active-site aperture in Rhizobium sp. sucrose isomerase confer hydrolytic activity. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-02-13

Peptides

Sucrose isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sucrose isomerase

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