- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x KPS: pseudouridine 5'-phosphate, linear(Covalent)
KPS.2: 17 residues within 4Å:- Chain A: E.54, T.56, I.57, G.61, K.116, T.135, V.136, T.153, G.154, G.155, S.170, D.172, K.189, F.219, T.293, L.297, N.312
16 PLIP interactions:15 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:K.189
- Hydrogen bonds: A:V.136, A:T.153, A:G.154, A:G.155, A:S.170, A:D.172, A:K.189, A:T.293, A:N.312
- Water bridges: A:G.158, A:A.171, A:D.172, A:T.293, C:E.202
- Salt bridges: A:K.116
KPS.3: 18 residues within 4Å:- Chain B: E.54, T.56, G.61, K.116, T.135, V.136, T.153, G.154, G.155, G.157, H.160, S.170, D.172, K.189, T.293, L.297, N.312
- Ligands: MN.4
19 PLIP interactions:5 interactions with chain A, 14 interactions with chain B- Water bridges: A:E.202, A:E.202, A:E.202, A:E.202, A:E.202, B:K.116, B:G.289
- Hydrophobic interactions: B:K.189
- Hydrogen bonds: B:T.56, B:V.136, B:G.154, B:G.155, B:S.170, B:D.172, B:K.189, B:T.293, B:T.293, B:N.312
- Salt bridges: B:K.116
KPS.5: 20 residues within 4Å:- Chain C: E.54, T.56, G.61, K.116, T.135, V.136, T.153, G.154, G.155, G.157, S.170, D.172, K.189, F.219, K.290, T.293, L.297, N.312, V.316
- Ligands: MN.6
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:K.189
- Hydrogen bonds: C:S.118, C:V.136, C:G.154, C:G.155, C:G.157, C:D.172, C:K.189, C:T.293, C:T.293
- Water bridges: C:K.116, C:K.116, C:I.169, B:E.202
- Salt bridges: C:K.116
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, S. et al., Pseudouridine monophosphate glycosidase: a new glycosidase mechanism. Biochemistry (2012)
- Release Date
- 2012-10-31
- Peptides
- Pseudouridine-5'-phosphate glycosidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x KPS: pseudouridine 5'-phosphate, linear(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, S. et al., Pseudouridine monophosphate glycosidase: a new glycosidase mechanism. Biochemistry (2012)
- Release Date
- 2012-10-31
- Peptides
- Pseudouridine-5'-phosphate glycosidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C