SMTL ID : 4gip.1

Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 (PIV5) fusion protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-3-3-mer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 3 residues within 4Å: Chain A: M.35, N.54 Chain B: T.163 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:M.35 Hydrogen bonds: A:N.54, B:T.163, B:T.163 NAG.2: 3 residues within 4Å: Chain B: N.250, T.252, R.253 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.252 Water bridges: B:R.253 NAG.3: 3 residues within 4Å: Chain B: N.355, S.359 Chain D: N.350 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:N.355, B:S.359 Hydrophobic interactions: D:N.350 NAG.4: 5 residues within 4Å: Chain C: M.35, N.54 Chain D: T.163, Y.164 Ligands: NAG.5 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:M.35 Hydrogen bonds: D:T.163 NAG.5: 2 residues within 4Å: Chain D: T.163 Ligands: NAG.4 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain D: N.250, T.252, R.253 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.252, D:R.253, D:R.253 NAG.7: 2 residues within 4Å: Chain D: N.355 Chain F: N.350 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:S.359 Water bridges: D:N.355 Hydrophobic interactions: F:N.350 NAG.8: 5 residues within 4Å: Chain E: M.35, N.54 Chain F: T.163, Y.164 Ligands: NAG.9 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain E Hydrogen bonds: F:T.163, F:T.163, E:N.54 Hydrophobic interactions: E:M.35 Water bridges: E:T.58, E:T.58 NAG.9: 2 residues within 4Å: Chain F: T.163 Ligands: NAG.8 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain F: N.250, T.252, R.253 No protein-ligand interaction detected (PLIP) NAG.11: 3 residues within 4Å: Chain B: N.350 Chain F: N.355, S.359 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:N.355 Hydrogen bonds: F:S.359 Water bridges: F:N.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Welch, B.D. et al., Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 fusion protein. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-19

Peptides

Fusion glycoprotein F2: ACE
Fusion glycoprotein F1: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

B
D

D
E

F
F

Fusion glycoprotein F2

Fusion glycoprotein F1