- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x MN: MANGANESE (II) ION(Non-covalent)
MN.1: 6 residues within 4Å:- Chain A: E.219, D.254, H.257, H.281, D.327
- Ligands: AOS.3
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.219, A:D.254, A:H.281, A:D.327
MN.2: 5 residues within 4Å:- Chain A: D.254, H.257, D.289, D.291
- Ligands: AOS.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.257, A:D.289, A:D.289
MN.4: 5 residues within 4Å:- Chain B: E.219, D.254, H.281, D.327
- Ligands: AFD.7
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.219, B:D.254, B:H.281, B:D.327
MN.5: 5 residues within 4Å:- Chain B: D.254, H.257, D.289, D.291
- Ligands: AFD.7
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.257, B:D.289, B:D.289
MN.6: 2 residues within 4Å:- Chain B: E.298
- Chain C: E.298
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Metal complexes: C:E.298, B:E.298
MN.8: 6 residues within 4Å:- Chain C: E.219, D.254, H.257, H.281, D.327
- Ligands: AOS.10
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.219, C:D.254, C:H.281, C:D.327
MN.9: 5 residues within 4Å:- Chain C: D.254, H.257, D.289, D.291
- Ligands: AOS.10
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.257, C:D.289, C:D.289
MN.11: 7 residues within 4Å:- Chain D: E.219, D.254, H.257, H.281, D.327
- Ligands: MN.12, AOS.14
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.219, D:D.254, D:H.281, D:D.327
MN.12: 7 residues within 4Å:- Chain D: K.221, D.254, H.257, D.289, D.291
- Ligands: MN.11, AOS.14
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.257, D:D.289, H2O.11
MN.13: 2 residues within 4Å:- Chain A: E.298
- Chain D: E.298
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: A:E.298, D:E.298, H2O.12
- 3 x AOS: D-ALLOSE(Non-covalent)
AOS.3: 13 residues within 4Å:- Chain A: W.57, F.131, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327
- Chain B: F.66
- Ligands: MN.1, MN.2
No protein-ligand interaction detected (PLIP)AOS.10: 13 residues within 4Å:- Chain C: W.57, F.131, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327
- Chain D: F.66
- Ligands: MN.8, MN.9
No protein-ligand interaction detected (PLIP)AOS.14: 14 residues within 4Å:- Chain C: F.66, I.429
- Chain D: W.57, W.104, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327
- Ligands: MN.11, MN.12
No protein-ligand interaction detected (PLIP)- 1 x AFD: alpha-D-allopyranose(Non-covalent)
AFD.7: 12 residues within 4Å:- Chain A: F.66
- Chain B: F.131, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327
- Ligands: MN.4, MN.5
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:R.65, B:K.221, B:H.257
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshida, H. et al., Structure of l-rhamnose isomerase in complex with l-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site. FEBS Open Bio (2013)
- Release Date
- 2012-12-12
- Peptides
- L-rhamnose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x AOS: D-ALLOSE(Non-covalent)
- 1 x AFD: alpha-D-allopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshida, H. et al., Structure of l-rhamnose isomerase in complex with l-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site. FEBS Open Bio (2013)
- Release Date
- 2012-12-12
- Peptides
- L-rhamnose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D