SMTL ID : 4gjs.1

Streptavidin-K121H

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x 0OD: trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)(Non-covalent)

0OD.1: 20 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, S.112, L.124, D.128 Chain D: W.120, H.121 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:N.49, A:W.79, A:W.79, A:W.79, A:L.110, A:L.124 Hydrogen bonds: A:N.23, A:S.27, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128 Metal complexes: D:H.121 0OD.3: 19 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, S.88, T.90, W.92, W.108, L.110, S.112, L.124, D.128 Chain C: W.120, H.121 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:N.49, B:W.79, B:W.79, B:W.79, B:L.110, B:L.124 Hydrogen bonds: B:N.23, B:S.27, B:Y.43, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128 Metal complexes: C:H.121 0OD.5: 20 residues within 4Å: Chain B: W.120, H.121 Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, S.112, L.124, D.128 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:N.49, C:W.79, C:W.79, C:W.79, C:L.110, C:L.124 Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128 Metal complexes: B:H.121 0OD.7: 19 residues within 4Å: Chain A: W.120, H.121 Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, S.88, T.90, W.92, W.108, L.110, S.112, L.124, D.128 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:N.49, D:W.79, D:W.79, D:W.79, D:L.110, D:L.124 Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128 Metal complexes: A:H.121

4 x RH: Rhodium(Non-covalent)

RH.2: 2 residues within 4Å: Chain A: H.127 Ligands: RH.4 No protein-ligand interaction detected (PLIP) RH.4: 2 residues within 4Å: Chain B: H.127 Ligands: RH.2 No protein-ligand interaction detected (PLIP) RH.6: 2 residues within 4Å: Chain C: H.127 Ligands: RH.8 No protein-ligand interaction detected (PLIP) RH.8: 2 residues within 4Å: Chain D: H.127 Ligands: RH.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimbron, J.M. et al., A dual anchoring strategy for the localization and activation of artificial metalloenzymes based on the biotin-streptavidin technology. J.Am.Chem.Soc. (2013)

Release Date

2013-02-13

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Streptavidin