SMTL ID : 4gjv.1

Streptavidin-S112H

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x 0OD: trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)(Non-covalent)

0OD.1: 21 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, H.112, L.124, D.128 Chain C: W.120 Ligands: 0OD.13 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.50, A:W.79, A:W.79, A:W.79, A:L.110, A:L.124 Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128 Metal complexes: A:H.112 0OD.7: 21 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, H.112, L.124, D.128 Chain D: W.120 Ligands: 0OD.19 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:A.50, B:W.79, B:W.79, B:W.79, B:L.110, B:L.124 Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128 Metal complexes: B:H.112 0OD.13: 21 residues within 4Å: Chain A: W.120 Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, H.112, L.124, D.128 Ligands: 0OD.1 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:A.50, C:W.79, C:W.79, C:W.79, C:L.110, C:L.124 Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128 Metal complexes: C:H.112 0OD.19: 21 residues within 4Å: Chain B: W.120 Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, H.112, L.124, D.128 Ligands: 0OD.7 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:A.50, D:W.79, D:W.79, D:W.79, D:L.110, D:L.124 Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128 Metal complexes: D:H.112

16 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: H.87 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.84 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: G.48 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: K.80 Chain D: D.36 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: H.87 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: R.84 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: G.48 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: K.80 Chain C: D.36 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain C: H.87 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain C: R.84 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain C: G.48 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: D.36 Chain C: K.80 Ligand excluded by PLIP CL.20: 1 residues within 4Å: Chain D: H.87 Ligand excluded by PLIP CL.21: 1 residues within 4Å: Chain D: R.84 Ligand excluded by PLIP CL.23: 1 residues within 4Å: Chain D: G.48 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain A: D.36 Chain D: K.80 Ligand excluded by PLIP

4 x RH: Rhodium(Non-covalent)

RH.4: 3 residues within 4Å: Chain A: H.127 Chain B: H.127 Ligands: RH.10 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.127 RH.10: 3 residues within 4Å: Chain A: H.127 Chain B: H.127 Ligands: RH.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.127 RH.16: 3 residues within 4Å: Chain C: H.127 Chain D: H.127 Ligands: RH.22 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.127 RH.22: 3 residues within 4Å: Chain C: H.127 Chain D: H.127 Ligands: RH.16 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimbron, J.M. et al., A dual anchoring strategy for the localization and activation of artificial metalloenzymes based on the biotin-streptavidin technology. J.Am.Chem.Soc. (2013)

Release Date

2013-02-13

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Streptavidin