SMTL ID : 4gjy.1

JMJD5 in complex with N-Oxalylglycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: H.140, D.142, H.219, W.233 Ligands: OGA.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.140, A:D.142, A:H.219, H2O.297

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 13 residues within 4Å: Chain A: Y.91, W.129, S.137, H.140, D.142, N.146, L.148, K.155, H.219, V.221, S.231, W.233 Ligands: CO.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.91, A:N.146, A:W.233 Water bridges: A:S.137, A:H.140 Salt bridges: A:K.155, A:H.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Rizzo, P.A. et al., Crystal Structure and Functional Analysis of JMJD5 Indicate an Alternate Specificity and Function. Mol.Cell.Biol. (2012)

Release Date

2012-09-05

Peptides

JmjC domain-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

JmjC domain-containing protein 5

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