SMTL ID : 4gkr.1 (1 other biounit)

Structure of the C-terminal motor domain of Kar3 from Candida glabrata

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.121 Ligands: ADP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.121, H2O.1, H2O.1, H2O.1, H2O.1

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: R.35, R.37, P.38, L.40, Q.115, T.116, G.117, S.118, G.119, K.120, T.121, Y.122 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.35, A:G.117, A:S.118, A:G.119, A:K.120, A:T.121, A:T.121, A:Y.122 Water bridges: A:R.35, A:T.116, A:K.120, A:T.121, A:T.121, A:T.121 Salt bridges: A:K.120 pi-Stacking: A:Y.122, A:Y.122

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: I.162, N.164, E.165, H.242, S.294, K.321, L.322 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.164, A:E.165, A:E.165, A:S.294, A:K.321, A:L.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, D. et al., Neck Rotation and Neck Mimic Docking in the Noncatalytic Kar3-associated Protein Vik1. J.Biol.Chem. (2012)

Release Date

2012-10-03

Peptides

Neck and C-terminal motor domain of Kar3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neck and C-terminal motor domain of Kar3

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