SMTL ID : 4gky.1

Crystal structure of a carbohydrate-binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.143, F.145, N.147, H.169, D.172 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.143, A:F.145, A:D.172, H2O.2, H2O.2 CA.2: 5 residues within 4Å: Chain A: D.146, D.148, N.152, N.153, D.172 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.146, A:D.148, A:D.148, A:D.172, H2O.2

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.3: 8 residues within 4Å: Chain A: A.111, D.112, F.145, N.147, H.169, G.242, G.243, L.244 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.112, A:N.147, A:G.242, A:G.243, A:L.244, A:L.244

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: T.88, K.89, A.91, Q.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.88 Water bridges: A:A.91 GOL.5: 4 residues within 4Å: Chain A: I.228, I.229, P.230, A.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, C. et al., Structural Characterization of Carbohydrate Binding by LMAN1 Protein Provides New Insight into the Endoplasmic Reticulum Export of Factors V (FV) and VIII (FVIII). J.Biol.Chem. (2013)

Release Date

2013-06-05

Peptides

Protein ERGIC-53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ERGIC-53

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