SMTL ID : 4gl3.1

Crystal structure of a putative glucoamylase (BACUNI_03963) from Bacteroides uniformis ATCC 8492 at 2.01 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 9 residues within 4Å: Chain A: H.103, E.126, F.129, W.176, E.195, F.250, Y.312, I.379 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.126 Water bridges: A:Y.312

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: F.27, R.28, W.31, D.32, F.72, V.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.32 GOL.3: 7 residues within 4Å: Chain A: H.103, F.115, D.119, W.176, H.177, H.188 Ligands: TRS.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.103, A:H.177, A:H.188 GOL.4: 3 residues within 4Å: Chain A: Q.12, L.13, R.345 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.15, A:D.15

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: E.43, R.44, Y.312 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.44 PEG.6: 5 residues within 4Å: Chain A: L.83, R.87, P.146, T.147, R.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.87 Water bridges: A:R.87, A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative glucoamylase (BACUNI_03963) from Bacteroides uniformis ATCC 8492 at 2.01 A resolution. To be published

Release Date

2012-08-29

Peptides

putative glucoamylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative glucoamylase