SMTL ID : 4glx.1

DNA ligase A in complex with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain D: C.408, C.411, C.426, C.432 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.408, D:C.411, D:C.426, D:C.432

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain D: R.74, T.507, R.510 3 PLIP interactions: 3 interactions with chain D Water bridges: D:R.510 Salt bridges: D:R.74, D:R.510

1 x 0XS: 2-amino-6-bromo-7-(trifluoromethyl)-1,8-naphthyridine-3-carboxamide(Non-covalent)

0XS.3: 12 residues within 4Å: Chain D: L.80, L.82, E.113, L.114, K.115, L.116, E.173, Y.225, V.288, K.290, P.307, W.309 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:L.82, D:V.288 Hydrogen bonds: D:E.113, D:E.113, D:L.116, D:L.116, D:K.290 Water bridges: D:K.115, D:K.115 pi-Stacking: D:Y.225, D:Y.225 Halogen bonds: D:L.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surivet, J.P. et al., Structure-guided design, synthesis and biological evaluation of novel DNA ligase inhibitors with in vitro and in vivo anti-staphylococcal activity. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-10-10

Peptides

DNA ligase: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

DNA ligase