SMTL ID : 4gmi.1

BACE-1 in complex with HEA-type macrocyclic inhibitor, MV078571

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 0XA: (4S,8E)-4-[(1R)-2-{[2-(5-TERT-BUTYL-1,3-OXAZOL-2-YL)PROPAN-2-YL]AMINO}-1-HYDROXYETHYL]-16-METHYL-6-OXA-3-AZABICYCLO[12.3.1]OCTADECA-1(18),8,14,16-TETRAENE-2,13-DIONE(Non-covalent)

0XA.1: 23 residues within 4Å: Chain A: G.17, Q.18, G.19, L.36, D.38, G.40, S.41, V.75, P.76, Y.77, T.78, Q.79, W.121, I.124, R.134, Y.204, I.232, D.234, G.236, T.237, T.238, R.241 Ligands: ACT.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.36, A:V.75, A:Y.77, A:Q.79, A:W.121, A:Y.204, A:I.232 Hydrogen bonds: A:D.38, A:T.78, A:Q.79, A:Q.79, A:D.234, A:G.236, A:T.238

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: T.78, Y.204, K.230, T.335 Ligands: 0XA.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.204, A:K.230 Salt bridges: A:K.230

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.193, L.194, W.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.193, A:L.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandgren, V. et al., Design and synthesis of novel BACE-1 inhibitors. To be Published

Release Date

2013-09-04

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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