SMTL ID : 4gmj.1 (2 other biounits)

Structure of human NOT1 MIF4G domain co-crystallized with CAF1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain B: D.40, T.41, D.161, E.278 Ligands: MG.2, GOL.3 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.40, B:E.278, H2O.2, H2O.2, H2O.2, H2O.2 MG.2: 7 residues within 4Å: Chain B: D.40, T.41, E.42, H.225, A.227, D.230 Ligands: MG.1 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.42, B:D.230, H2O.2, H2O.2, H2O.2 MG.5: 1 residues within 4Å: Chain B: E.53 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain B: T.41, E.42, F.43, G.45, L.116, Y.160, H.225, Y.277, E.278, E.280 Ligands: MG.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.42, B:E.42, B:E.42, B:F.43

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain B: L.72, K.73, I.74, T.133, Y.164, K.167, I.168 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petit, A.P. et al., The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex. Nucleic Acids Res. (2012)

Release Date

2012-10-03

Peptides

CCR4-NOT transcription complex subunit 1: A
CCR4-NOT transcription complex subunit 7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CCR4-NOT transcription complex subunit 1

CCR4-NOT transcription complex subunit 7

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