SMTL ID : 4gms.1

Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.95 Å
Oligo State
hetero-3-3-3-3-mer
Ligands
5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
18 x SO4: SULFATE ION(Non-functional Binders)
2 x GOL: GLYCEROL(Non-functional Binders)
1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Lee, P.S. et al., Heterosubtypic antibody recognition of the influenza virus hemagglutinin receptor binding site enhanced by avidity. Proc.Natl.Acad.Sci.USA (2012)
Release Date
2012-10-03
Peptides
Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF
Fab S139/1 light chain: GIK
Fab S139/1 heavy chain: HJL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
E
E
B
B
D
D
F
F
G
L
I
M
K
N
H
H
J
I
L
J

Hemagglutinin HA1 chain

Toggle Identical (ACE)

Hemagglutinin HA2 chain

Toggle Identical (BDF)

Fab S139/1 light chain

Fab S139/1 heavy chain

Related Entries With Identical Sequence

4gmt.1 | 4gmt.2 | 4o58.1