SMTL ID : 4gnc.2 (1 other biounit)

human SMP30/GNL-1,5-AG complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.18, N.103, D.104, N.154, D.204 Ligands: ASO.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.18, A:D.104, A:D.104, A:D.204, H2O.3

3 x ASO: 1,5-anhydro-D-glucitol(Non-covalent)

ASO.2: 12 residues within 4Å: Chain A: E.18, I.34, R.101, N.103, D.104, M.118, E.121, N.154, D.204, Y.219, T.246 Ligands: CA.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.18, A:E.18, A:R.101, A:R.101, A:N.103, A:N.103, A:E.121, A:D.204 ASO.3: 6 residues within 4Å: Chain A: W.22, E.24, G.252, K.253, N.254, Y.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.22, A:N.254 ASO.4: 6 residues within 4Å: Chain A: E.23, S.26, R.41, G.67, G.68, Y.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.26, A:R.41, A:G.68, A:Y.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aizawa, S. et al., Structural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase. Plos One (2013)

Release Date

2013-04-10

Peptides

Regucalcin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Regucalcin

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