SMTL ID : 4goy.4 (3 other biounits)

The crystal structure of human fascin 1 K41A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

10 x BR: BROMIDE ION(Non-covalent)

BR.1: 5 residues within 4Å: Chain A: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: Y.230, G.243, K.244 Ligand excluded by PLIP BR.3: 3 residues within 4Å: Chain A: R.167, D.168, V.169 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: R.82, E.83, V.84 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: G.86, P.87, R.90 Ligand excluded by PLIP BR.16: 5 residues within 4Å: Chain B: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.17: 3 residues within 4Å: Chain B: Y.230, G.243, K.244 Ligand excluded by PLIP BR.18: 3 residues within 4Å: Chain B: R.167, D.168, V.169 Ligand excluded by PLIP BR.19: 3 residues within 4Å: Chain B: R.82, E.83, V.84 Ligand excluded by PLIP BR.20: 3 residues within 4Å: Chain B: G.86, P.87, R.90 Ligand excluded by PLIP

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: R.110, Q.124 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Q.182, R.185 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: R.398, K.399, R.408 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: G.235 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: R.100, P.128 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: R.217, S.218, K.250, L.253 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain B: R.110, Q.124 Ligand excluded by PLIP CL.22: 2 residues within 4Å: Chain B: Q.182, R.185 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain B: R.398, K.399, R.408 Ligand excluded by PLIP CL.24: 1 residues within 4Å: Chain B: G.235 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain B: R.100, P.128 Ligand excluded by PLIP CL.26: 4 residues within 4Å: Chain B: R.217, S.218, K.250, L.253 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 8 residues within 4Å: Chain A: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.381, A:R.383 Water bridges: A:F.418 GOL.13: 9 residues within 4Å: Chain A: L.40, I.45, A.137, R.389, H.392, G.393, F.394, R.408, S.409 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.389, A:R.389, A:H.392, A:R.408 GOL.14: 9 residues within 4Å: Chain A: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.344, A:F.453 GOL.27: 8 residues within 4Å: Chain B: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.381, B:R.383 Water bridges: B:F.418 GOL.28: 9 residues within 4Å: Chain B: L.40, I.45, A.137, R.389, H.392, G.393, F.394, R.408, S.409 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.389, B:R.389, B:H.392, B:R.408 GOL.29: 9 residues within 4Å: Chain B: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.344, B:F.453

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.15: 3 residues within 4Å: Chain A: F.29, G.30, K.32 No protein-ligand interaction detected (PLIP) DTT.30: 3 residues within 4Å: Chain B: F.29, G.30, K.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular mechanism of fascin function in filopodial formation. J.Biol.Chem. (2013)

Release Date

2012-11-28

Peptides

Fascin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Fascin

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