SMTL ID : 4gp3.4 (3 other biounits)

The crystal structure of human fascin 1 K358A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

8 x BR: BROMIDE ION(Non-covalent)

BR.1: 3 residues within 4Å: Chain A: R.167, D.168, V.169 Ligand excluded by PLIP BR.2: 5 residues within 4Å: Chain A: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: R.229, Y.230, G.243, K.244 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: G.86, P.87, R.90 Ligand excluded by PLIP BR.22: 3 residues within 4Å: Chain B: R.167, D.168, V.169 Ligand excluded by PLIP BR.23: 5 residues within 4Å: Chain B: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.24: 4 residues within 4Å: Chain B: R.229, Y.230, G.243, K.244 Ligand excluded by PLIP BR.25: 3 residues within 4Å: Chain B: G.86, P.87, R.90 Ligand excluded by PLIP

26 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: R.110, Q.124 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: Q.182, D.183, R.185 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.82, E.83, V.84 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: A.58, R.217, S.218, K.250 Chain B: G.56 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: F.418, D.420 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: R.398, K.399, R.408 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.408, S.409 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: Q.104, R.109 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: R.185 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: G.445, D.446 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain A: R.468 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Chain A: D.450 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: E.417, F.418 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain B: R.110, Q.124 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Chain B: Q.182, D.183, R.185 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain B: R.82, E.83, V.84 Ligand excluded by PLIP CL.29: 5 residues within 4Å: Chain A: G.56 Chain B: A.58, R.217, S.218, K.250 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain B: F.418, D.420 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain B: R.398, K.399, R.408 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain B: R.408, S.409 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain B: Q.104, R.109 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain B: R.185 Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain B: G.445, D.446 Ligand excluded by PLIP CL.36: 1 residues within 4Å: Chain B: R.468 Ligand excluded by PLIP CL.37: 1 residues within 4Å: Chain B: D.450 Ligand excluded by PLIP CL.38: 2 residues within 4Å: Chain B: E.417, F.418 Ligand excluded by PLIP

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.18: 8 residues within 4Å: Chain A: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.383 GOL.19: 6 residues within 4Å: Chain A: K.32, V.33, V.78, D.117, R.118, L.119 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.33, A:L.119 Water bridges: A:V.78, A:V.78, A:V.78 GOL.20: 4 residues within 4Å: Chain A: S.133, V.134, Q.184, Y.186 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.133, A:Q.184, A:Y.186 Water bridges: A:S.410 GOL.21: 8 residues within 4Å: Chain A: D.342, I.345, M.378, G.421, Y.423, F.452, F.453, F.455 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.421, A:Y.423, A:Y.423, A:F.453 GOL.39: 8 residues within 4Å: Chain B: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.383 GOL.40: 6 residues within 4Å: Chain B: K.32, V.33, V.78, D.117, R.118, L.119 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.33, B:L.119 Water bridges: B:V.78, B:V.78, B:V.78 GOL.41: 4 residues within 4Å: Chain B: S.133, V.134, Q.184, Y.186 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.133, B:Q.184 Water bridges: B:S.410 GOL.42: 8 residues within 4Å: Chain B: D.342, I.345, M.378, G.421, Y.423, F.452, F.453, F.455 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.421, B:Y.423, B:F.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular mechanism of fascin function in filopodial formation. J.Biol.Chem. (2013)

Release Date

2012-11-28

Peptides

Fascin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Fascin

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