SMTL ID : 4gqk.1 (1 other biounit)

Structure of Native VgrG1-ACD with ADP (no cations)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: F.16, F.20, S.24, I.25, G.26, I.27, E.28, V.92, S.93, P.95, T.176, G.178, R.280, I.333, A.336, L.349 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.24, A:S.24, A:I.27, A:S.93, A:T.176 Water bridges: A:E.90, A:K.272, A:R.280, A:R.280, A:T.337 Salt bridges: A:R.280, A:R.280 pi-Stacking: A:F.16

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.272, R.353 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.272, A:R.353 Salt bridges: A:K.272, A:R.353 SO4.3: 2 residues within 4Å: Chain A: T.116, T.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.116, A:T.120 Water bridges: A:H.117, A:T.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, V.S. et al., Structure of Native VgrG1-ACD with ADP (no cations). To be Published

Release Date

2013-09-25

Peptides

VgrG protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VgrG protein

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