SMTL ID : 4grk.1

Crystal Structure of C-lobe of Bovine lactoferrin Complexed with ketorolac at 1.68 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x LEU- GLU- ALA- CYS- ALA- PHE: C-terminal peptide from Lactotransferrin(Non-covalent)

LEU-GLU-ALA-CYS-ALA-PHE.1: 6 residues within 4Å: Chain A: D.37, I.40, V.41, T.60, K.63, C.64 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.37, A:I.40, A:V.41, A:T.60 Hydrogen bonds: A:K.63

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.2: 7 residues within 4Å: Chain A: G.131, L.132, N.135, E.323, T.326, A.327, N.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.330 Water bridges: A:K.333

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 10 residues within 4Å: Chain A: K.75, S.76, S.77, L.93, N.204, D.205, W.208, E.209, E.214, Q.244 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.214 Hydrogen bonds: A:S.77 Water bridges: A:K.75, A:R.225

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: Q.23, S.24, N.27, H.272, Q.273, L.276 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.276 Hydrogen bonds: A:N.27, A:Q.273 Water bridges: A:H.272

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 2 residues within 4Å: Chain A: G.312, E.318 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.318, A:E.318 ZN.6: 1 residues within 4Å: Chain A: H.247 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x FE: FE (III) ION(Non-covalent)

FE.7: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.8: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.122

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 3 residues within 4Å: Chain A: K.100, R.229, R.237 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.229, A:R.237 Salt bridges: A:R.229, A:R.237

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 5 residues within 4Å: Chain A: W.107, N.108, Q.136, T.137, F.145 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.107 GOL.12: 6 residues within 4Å: Chain A: S.178, E.180, K.181, Y.183, T.186, R.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.180, A:R.190

1 x KTR: (1R)-5-benzoyl-2,3-dihydro-1H-pyrrolizine-1-carboxylic acid(Non-covalent)

KTR.11: 7 residues within 4Å: Chain A: T.89, E.90, G.91, V.250, P.252, N.253, Y.319 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.250, A:V.250, A:V.250 Hydrogen bonds: A:T.89, A:N.253, A:Y.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gautam, L. et al., Crystal Structure of C-lobe of Bovine lactoferrin Complexed with ketorolac at 1.68 A Resolution. To be Published

Release Date

2012-09-19

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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