SMTL ID : 4gt0.2 (1 other biounit)

Structure of dengue virus serotype 1 sE containing stem to residue 421

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.83, K.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.134 NAG.4: 2 residues within 4Å: Chain B: N.83, K.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.134 NAG.7: 2 residues within 4Å: Chain C: N.83, K.134 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.134

6 x CD: CADMIUM ION(Non-covalent)

CD.2: 1 residues within 4Å: Chain A: D.26 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.26, A:D.26, H2O.2 CD.3: 3 residues within 4Å: Chain A: H.43, H.298, E.384 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.43, A:H.298 CD.5: 1 residues within 4Å: Chain B: D.26 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.26, B:D.26, H2O.6 CD.6: 3 residues within 4Å: Chain B: H.43, H.298, E.384 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.43, B:H.298 CD.8: 1 residues within 4Å: Chain C: D.26 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.26, C:D.26, H2O.10 CD.9: 3 residues within 4Å: Chain C: H.43, H.298, E.384 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.43, C:H.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klein, D.E. et al., Structure of a dengue virus envelope protein late-stage fusion intermediate. J.Virol. (2013)

Release Date

2012-12-19

Peptides

Envelope protein E: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

Envelope protein E

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