SMTL ID : 4gu8.9 (8 other biounits)

Crystal Structure of Burkholderia oklahomensis agglutinin (BOA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-octamer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: N.48, I.49, K.50, A.113, L.114, D.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.49, A:L.114 Water bridges: A:D.115 GOL.2: 3 residues within 4Å: Chain A: R.106, V.107, Q.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.107 GOL.3: 5 residues within 4Å: Chain A: A.150, E.152, R.273, A.274, M.275 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.275 Water bridges: A:E.152 GOL.4: 4 residues within 4Å: Chain A: S.251, G.252 Chain D: S.261, P.269 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain D Water bridges: A:S.251, D:E.246, D:S.261 Hydrogen bonds: D:S.261 GOL.5: 6 residues within 4Å: Chain A: G.201, P.202 Chain D: G.183, S.184, T.185, V.245 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.184, D:V.245

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.6: 14 residues within 4Å: Chain E: S.79, N.80, C.105, R.106, V.107, A.211, G.212, N.213, N.214, L.235, R.239, S.240, G.241, N.243 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:S.79, E:S.79, E:G.241 Water bridges: E:N.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitley, M.J. et al., Burkholderia oklahomensis agglutinin is a canonical two-domain OAA-family lectin: structures, carbohydrate binding and anti-HIV activity. Febs J. (2013)

Release Date

2013-05-08

Peptides

Burkholderia oklahomensis agglutinin (BOA): ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Burkholderia oklahomensis agglutinin (BOA)

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