SMTL ID : 4gvd.2 (1 other biounit)

Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with Syndecan1 Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x THR- LYS- GLN- GLU- GLU- PHE- TYR- ALA: Syndecan-1(Non-covalent)

THR-LYS-GLN-GLU-GLU-PHE-TYR-ALA.1: 16 residues within 4Å: Chain A: T.21, Y.22, G.23, F.24, S.25, L.26, S.27, S.28, V.29, N.40, S.41, S.72, L.75, K.76, L.79 Ligands: ANS.4 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.29, A:L.75, A:K.76, A:L.79, A:L.79 Hydrogen bonds: A:T.21, A:Y.22, A:G.23, A:F.24, A:F.24, A:F.24, A:S.25, A:L.26, A:L.26, A:S.28, A:S.28, A:S.28, A:N.40, A:S.72 Water bridges: A:E.30, A:N.40

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: V.42, A.55 Ligands: CL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.42 Water bridges: A:A.55

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: S.41, V.42 Ligands: NA.2 Ligand excluded by PLIP

1 x ANS: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)(Non-covalent)

ANS.4: 3 residues within 4Å: Chain A: V.29 Ligands: THR-LYS-GLN-GLU-GLU-PHE-TYR-ALA.1, THR-LYS-GLN-GLU-GLU-PHE-TYR-ALA.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics. Structure (2013)

Release Date

2013-03-13

Peptides

T-lymphoma invasion and metastasis-inducing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

T-lymphoma invasion and metastasis-inducing protein 1

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