SMTL ID : 4gwf.2 (1 other biounit)

Crystal structure of the tyrosine phosphatase SHP-2 with Y279C mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: R.25, F.28, F.62, Y.84, L.95, E.273, Q.276 Ligands: EDO.9 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.25, A:R.25, A:Y.84, A:Y.84, A:E.273, A:Q.276 Water bridges: A:Q.277 EDO.2: 5 residues within 4Å: Chain A: P.333, K.346, Y.348, I.495, D.498 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.348, A:Y.348, A:D.494 EDO.3: 6 residues within 4Å: Chain A: L.457, D.458, H.541, Y.542, T.545 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.541, A:H.541 EDO.4: 6 residues within 4Å: Chain A: E.461, Y.542, T.545, L.546, R.549 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.542, A:R.549 EDO.5: 4 residues within 4Å: Chain A: R.372, T.435, W.437, I.470 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.372, A:T.435 EDO.6: 7 residues within 4Å: Chain A: S.24, W.27, A.96, V.99, Q.100, M.103, C.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.96 EDO.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: S.412, E.421, W.437 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.421 Water bridges: A:E.421 EDO.9: 8 residues within 4Å: Chain A: F.62, Y.84, F.272, Q.276, Q.527, T.528, E.529 Ligands: EDO.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.84, A:Y.84, A:Q.276, A:E.529 Water bridges: A:A.530 EDO.10: 5 residues within 4Å: Chain A: D.315, G.316, D.317, R.364, V.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.317 Water bridges: A:V.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal structure of the tyrosine phosphatase SHP-2 with Y279C mutation. TO BE PUBLISHED

Release Date

2013-09-04

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein phosphatase non-receptor type 11

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