SMTL ID : 4gwg.2 (1 other biounit)

Crystal Structure Analysis of 6-phosphogluconate dehydrogenase apo-form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

homo-dimer

Ligands

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 5 residues within 4Å: Chain A: E.106, Y.107, R.108, M.186, W.267 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.107, A:R.108 Water bridges: A:R.108, A:R.108 Salt bridges: A:E.106 MES.2: 6 residues within 4Å: Chain A: G.132, E.133 Chain B: F.451, G.452, A.453, H.454 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:H.454, A:E.133 Hydrogen bonds: A:E.133 MES.3: 5 residues within 4Å: Chain B: E.106, Y.107, R.108, M.186, W.267 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.107, B:R.108 Water bridges: B:R.108, B:R.108 Salt bridges: B:E.106 MES.4: 6 residues within 4Å: Chain A: F.451, G.452, A.453, H.454 Chain B: G.132, E.133 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:H.454, B:E.133 Hydrogen bonds: B:E.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hitosugi, T. et al., Phosphoglycerate mutase 1 coordinates glycolysis and biosynthesis to promote tumor growth. Cancer Cell (2012)

Release Date

2012-11-28

Peptides

6-phosphogluconate dehydrogenase, decarboxylating: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

6-phosphogluconate dehydrogenase, decarboxylating

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