SMTL ID : 4gwu.1

Crystal Structure of Fru 2,6-bisphosphate complexes of Porcine Liver Fructose-1,6-bisphosphatase with Filled Central Cavity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x FDP: 2,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FDP.1: 19 residues within 4Å: Chain A: E.97, D.118, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: MG.2 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.97, A:D.121, A:G.122, A:S.123, A:S.124, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274, A:R.276 Water bridges: A:R.276 Salt bridges: A:K.274, A:K.274, B:R.243 FDP.3: 19 residues within 4Å: Chain A: R.243 Chain B: E.97, D.118, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: MG.4 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.97, B:D.121, B:G.122, B:S.123, B:S.124, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274, B:R.276 Water bridges: B:R.276 Salt bridges: B:K.274, B:K.274, A:R.243 FDP.5: 19 residues within 4Å: Chain C: E.97, D.118, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: MG.6 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:S.124, C:N.212, C:Y.244, C:M.248, C:K.274, C:R.276 Water bridges: C:R.276 Salt bridges: C:K.274, C:K.274, D:R.243 FDP.7: 19 residues within 4Å: Chain C: R.243 Chain D: E.97, D.118, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: MG.8 13 PLIP interactions: 1 interactions with chain C, 12 interactions with chain D Salt bridges: C:R.243, D:K.274, D:K.274 Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:S.124, D:N.212, D:Y.244, D:M.248, D:K.274, D:R.276 Water bridges: D:R.276

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: E.97, D.118, D.121, R.276, E.280 Ligands: FDP.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.97, A:D.118, A:D.118, A:D.121, A:E.280 MG.4: 6 residues within 4Å: Chain B: E.97, D.118, D.121, R.276, E.280 Ligands: FDP.3 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.97, B:D.118, B:D.118, B:D.121, B:E.280 MG.6: 6 residues within 4Å: Chain C: E.97, D.118, D.121, R.276, E.280 Ligands: FDP.5 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.97, C:D.118, C:D.118, C:D.121, C:E.280 MG.8: 6 residues within 4Å: Chain D: E.97, D.118, D.121, R.276, E.280 Ligands: FDP.7 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.97, D:D.118, D:D.118, D:D.121, D:E.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Hydrophobic Central Cavity in Fructose-1,6-bisphosphatase is Essential for the Synergism in AMP/Fru 2,6-bisphosphate Inhibition. To be Published

Release Date

2013-09-04

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase 1

Related Entries With Identical Sequence