SMTL ID : 4gww.1

Crystal Structure of product complexes of Porcine Liver Fructose-1,6-bisphosphatase with blocked subunit pair rotation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

8 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 12 residues within 4Å: Chain A: G.21, A.24, G.26, T.27, G.28, E.29, M.30, K.112, Y.113, V.160, A.161, M.177 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113, A:Y.113 Salt bridges: A:K.112 F6P.2: 15 residues within 4Å: Chain A: D.121, G.122, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275 Chain B: R.243 Ligands: MG.4, PO4.5 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.121, A:D.121, A:G.122, A:S.124, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274 Salt bridges: A:K.274, B:R.243 F6P.6: 12 residues within 4Å: Chain B: G.21, A.24, G.26, T.27, G.28, E.29, M.30, K.112, Y.113, V.160, A.161, M.177 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113, B:Y.113 Salt bridges: B:K.112 F6P.7: 15 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275 Ligands: MG.9, PO4.10 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:D.121, B:G.122, B:S.124, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274 Salt bridges: B:K.274, A:R.243 F6P.11: 12 residues within 4Å: Chain C: G.21, A.24, G.26, T.27, G.28, E.29, M.30, K.112, Y.113, V.160, A.161, M.177 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.27, C:G.28, C:E.29, C:M.30, C:Y.113 Salt bridges: C:K.112 F6P.12: 15 residues within 4Å: Chain C: D.121, G.122, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275 Chain D: R.243 Ligands: MG.14, PO4.15 10 PLIP interactions: 1 interactions with chain D, 9 interactions with chain C Salt bridges: D:R.243, C:K.274 Hydrogen bonds: C:D.121, C:D.121, C:G.122, C:S.124, C:N.212, C:Y.244, C:M.248, C:K.274 F6P.16: 12 residues within 4Å: Chain D: G.21, A.24, G.26, T.27, G.28, E.29, M.30, K.112, Y.113, V.160, A.161, M.177 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.27, D:G.28, D:E.29, D:M.30, D:Y.113 Salt bridges: D:K.112 F6P.17: 15 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275 Ligands: MG.19, PO4.20 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.121, D:D.121, D:G.122, D:S.124, D:N.212, D:Y.244, D:M.248, D:K.274 Salt bridges: D:K.274, C:R.243

8 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.97, A:D.118, A:L.120 MG.4: 6 residues within 4Å: Chain A: E.97, D.118, D.121, E.280 Ligands: F6P.2, PO4.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.97, A:D.118, A:D.121, A:E.280 MG.8: 6 residues within 4Å: Chain B: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.97, B:D.118, B:L.120 MG.9: 6 residues within 4Å: Chain B: E.97, D.118, D.121, E.280 Ligands: F6P.7, PO4.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.97, B:D.118, B:D.121, B:E.280 MG.13: 6 residues within 4Å: Chain C: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.15 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.97, C:D.118, C:L.120 MG.14: 6 residues within 4Å: Chain C: E.97, D.118, D.121, E.280 Ligands: F6P.12, PO4.15 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.97, C:D.118, C:D.121, C:E.280 MG.18: 6 residues within 4Å: Chain D: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.20 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.97, D:D.118, D:L.120 MG.19: 6 residues within 4Å: Chain D: E.97, D.118, D.121, E.280 Ligands: F6P.17, PO4.20 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.97, D:D.118, D:D.121, D:E.280

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 10 residues within 4Å: Chain A: D.74, E.97, L.120, D.121, G.122, S.123, S.124 Ligands: F6P.2, MG.3, MG.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.74, A:E.97, A:D.118, A:G.122, A:S.123, A:S.124 PO4.10: 10 residues within 4Å: Chain B: D.74, E.97, L.120, D.121, G.122, S.123, S.124 Ligands: F6P.7, MG.8, MG.9 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.74, B:E.97, B:D.118, B:G.122, B:S.123, B:S.124 PO4.15: 10 residues within 4Å: Chain C: D.74, E.97, L.120, D.121, G.122, S.123, S.124 Ligands: F6P.12, MG.13, MG.14 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:D.74, C:E.97, C:D.118, C:G.122, C:S.123, C:S.124 PO4.20: 10 residues within 4Å: Chain D: D.74, E.97, L.120, D.121, G.122, S.123, S.124 Ligands: F6P.17, MG.18, MG.19 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.74, D:E.97, D:D.118, D:G.122, D:S.123, D:S.124

Links

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Citation

Gao, Y. et al., Functional Importance of Subunit Pair Rotation in Regulation of Tetrameric Mammalian Fructose-1,6-bisphosphatase. To be Published

Release Date

2013-09-11

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase 1

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