SMTL ID : 4gwx.1

Crystal Structure of product complexes of Porcine Liver Fructose-1,6-bisphosphatase with restrained subunit pair rotation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 15 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, R.276, E.280 Chain B: R.243 Ligands: PO4.2, MG.5 15 PLIP interactions: 3 interactions with chain B, 12 interactions with chain A Water bridges: B:R.243, B:R.243, A:S.124, A:Y.215, A:Y.215 Salt bridges: B:R.243, A:K.274 Hydrogen bonds: A:D.121, A:G.122, A:S.123, A:N.212, A:Y.244, A:M.248, A:K.274, A:R.276 F6P.7: 15 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, R.276, E.280 Ligands: PO4.8, MG.11 15 PLIP interactions: 3 interactions with chain A, 12 interactions with chain B Water bridges: A:R.243, A:R.243, B:S.124, B:Y.215, B:Y.215 Salt bridges: A:R.243, B:K.274 Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:N.212, B:Y.244, B:M.248, B:K.274, B:R.276 F6P.13: 15 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, R.276, E.280 Chain D: R.243 Ligands: PO4.14, MG.17 18 PLIP interactions: 15 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:N.212, C:Y.215, C:Y.244, C:Y.244, C:M.248, C:Y.264, C:K.274, C:R.276 Water bridges: C:S.124, C:Y.215, C:Y.264, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.19: 15 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, R.276, E.280 Ligands: PO4.20, MG.23 18 PLIP interactions: 15 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:N.212, D:Y.215, D:Y.244, D:Y.244, D:M.248, D:Y.264, D:K.274, D:R.276 Water bridges: D:S.124, D:Y.215, D:Y.264, C:R.243, C:R.243 Salt bridges: D:K.274, C:R.243

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 14 residues within 4Å: Chain A: D.68, D.74, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.1, MG.4, MG.5, MG.6 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.120, A:G.122, A:S.123 Water bridges: A:D.74, A:S.123, A:S.123 Salt bridges: A:R.276 PO4.3: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Salt bridges: A:K.112 PO4.8: 14 residues within 4Å: Chain B: D.68, D.74, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.7, MG.10, MG.11, MG.12 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.120, B:G.122, B:S.123 Water bridges: B:D.74, B:S.123, B:S.123 Salt bridges: B:R.276 PO4.9: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113 Salt bridges: B:K.112 PO4.14: 14 residues within 4Å: Chain C: D.68, D.74, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.13, MG.16, MG.17, MG.18 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:L.120, C:G.122, C:S.123, C:E.280 Water bridges: C:E.98, C:S.123, C:S.123 Salt bridges: C:R.276 PO4.15: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:Y.113, C:Y.113 Salt bridges: C:K.112 PO4.20: 14 residues within 4Å: Chain D: D.68, D.74, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.19, MG.22, MG.23, MG.24 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:L.120, D:G.122, D:S.123 Water bridges: D:E.98, D:S.123, D:S.123 Salt bridges: D:R.276 PO4.21: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:G.28, D:E.29, D:M.30, D:Y.113, D:Y.113 Salt bridges: D:K.112

12 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 7 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: PO4.2, MG.5, MG.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:L.120, H2O.1 MG.5: 7 residues within 4Å: Chain A: D.118, D.121, R.276, E.280 Ligands: F6P.1, PO4.2, MG.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 MG.6: 5 residues within 4Å: Chain A: N.64, D.68, E.97 Ligands: PO4.2, MG.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.68, A:E.97, H2O.1 MG.10: 7 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: PO4.8, MG.11, MG.12 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.97, B:D.118, B:L.120, H2O.5 MG.11: 7 residues within 4Å: Chain B: D.118, D.121, R.276, E.280 Ligands: F6P.7, PO4.8, MG.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 MG.12: 5 residues within 4Å: Chain B: N.64, D.68, E.97 Ligands: PO4.8, MG.10 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.68, B:E.97, H2O.5 MG.16: 7 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: PO4.14, MG.17, MG.18 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:L.120, H2O.9 MG.17: 7 residues within 4Å: Chain C: D.118, D.121, R.276, E.280 Ligands: F6P.13, PO4.14, MG.16 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 MG.18: 5 residues within 4Å: Chain C: N.64, D.68, E.97 Ligands: PO4.14, MG.16 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.68, C:E.97, H2O.9 MG.22: 7 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: PO4.20, MG.23, MG.24 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.97, D:D.118, D:L.120, H2O.13 MG.23: 7 residues within 4Å: Chain D: D.118, D.121, R.276, E.280 Ligands: F6P.19, PO4.20, MG.22 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280 MG.24: 5 residues within 4Å: Chain D: N.64, D.68, E.97 Ligands: PO4.20, MG.22 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.68, D:E.97, H2O.13

Links

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Citation

Gao, Y. et al., Functional Importance of Subunit Pair Rotation in Regulation of Tetrameric Mammalian Fructose-1,6-bisphosphatase. To be Published

Release Date

2013-09-04

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase 1

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