SMTL ID : 4gxi.1

R283K DNA polymerase beta binary complex with a templating 8OG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x DG- DT- DC- DG- DG: DNA (5'-D(P*GP*TP*CP*GP*G)-3')(Non-covalent)

DG-DT-DC-DG-DG.1: 18 residues within 4Å: Chain A: H.34, K.35, A.38, Y.39, L.62, P.63, G.64, V.65, G.66, T.67, K.68, I.69 Chain B: C.1, C.2, G.3, A.4, C.5 Ligands: NA.5 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.34 pi-Stacking: A:H.34

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: T.101, V.103, I.106 Chain C: G.9 Ligands: NA.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.103, A:G.105, A:I.106 NA.3: 3 residues within 4Å: Chain A: T.101, R.102 Ligands: NA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.101 Water bridges: A:T.101 NA.4: 1 residues within 4Å: Chain A: S.171 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.171 NA.5: 4 residues within 4Å: Chain A: K.60, L.62, V.65 Ligands: DG-DT-DC-DG-DG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.60, A:V.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freudenthal, B.D. et al., DNA polymerase minor groove interactions modulate mutagenic bypass of a templating 8-oxoguanine lesion. Nucleic Acids Res. (2013)

Release Date

2013-01-16

Peptides

DNA polymerase beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase beta

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