SMTL ID : 4gxr.1

Structure of ATP bound RpMatB-BxBclM chimera B3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: T.163, S.164, G.165, T.166, T.167, K.171, H.207, S.277, A.278, P.279, E.298, R.299, Y.300, G.301, M.302, T.303, V.322, D.382, I.394, R.397 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:T.163, A:S.164, A:G.165, A:T.166, A:T.166, A:T.166, A:T.167, A:T.167, A:S.277, A:E.298, A:T.303, A:T.303, A:D.382, A:R.397 Water bridges: A:T.163, A:G.168, A:L.280, A:G.301, A:R.397, A:R.397, A:R.397, A:R.397, A:R.397 Salt bridges: A:H.207, A:R.397 pi-Stacking: A:Y.300

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.8, L.185, F.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.8, A:R.8 Water bridges: A:R.8 GOL.5: 3 residues within 4Å: Chain A: V.52, G.53, R.152 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.152, A:R.152 Water bridges: A:G.53, A:D.156, A:D.156, A:L.157 GOL.6: 6 residues within 4Å: Chain A: F.231, T.251, R.255, T.485, M.486, G.487 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.231, A:T.251 Water bridges: A:N.484 GOL.7: 2 residues within 4Å: Chain A: R.111, A.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.111, A:R.111 Water bridges: A:V.125

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: D.283, D.419, V.424, V.425, K.448 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.425 Water bridges: A:D.419, A:V.424

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.8: 7 residues within 4Å: Chain A: H.207, T.208, H.209, S.277, R.299, G.301, M.307 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.209, A:S.277, A:R.299, A:R.299, A:G.301 Water bridges: A:G.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crosby, H.A. et al., Structural Insights into the Substrate Specificity of the Rhodopseudomonas palustris Protein Acetyltransferase RpPat: IDENTIFICATION OF A LOOP CRITICAL FOR RECOGNITION BY RpPat. J.Biol.Chem. (2012)

Release Date

2012-10-24

Peptides

Malonyl CoA synthetase, Benzoate-CoA ligase Chimeric protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Malonyl CoA synthetase, Benzoate-CoA ligase Chimeric protein