SMTL ID : 4gxx.1

Crystal structure of the "avianized" 1918 influenza virus hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.1: 9 residues within 4Å: Chain A: N.68, E.70, E.90, N.91, C.94, S.141, K.223, V.224, R.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.225, A:R.225 Water bridges: A:G.226, A:R.225

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 8 residues within 4Å: Chain C: N.68, E.70, E.90, N.91, C.94, K.223, V.224, R.225 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.225

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.3: 7 residues within 4Å: Chain E: N.68, E.70, E.90, N.91, C.94, S.141, R.225 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.225

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15 NAG.5: 2 residues within 4Å: Chain C: N.15, T.17 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:T.17 NAG.6: 2 residues within 4Å: Chain C: N.280, N.291 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain E: N.15 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:N.15 Hydrogen bonds: E:N.15 NAG.8: 5 residues within 4Å: Chain F: A.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:N.154 Hydrogen bonds: F:A.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsibane, T. et al., Influenza Human Monoclonal Antibody 1F1 Interacts with Three Major Antigenic Sites and Residues Mediating Human Receptor Specificity in H1N1 Viruses. Plos Pathog. (2012)

Release Date

2012-12-19

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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