SMTL ID : 4gys.1

Granulibacter bethesdensis allophanate hydrolase co-crystallized with malonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 13 residues within 4Å: Chain A: A.151, T.152, G.153, L.154, S.177, T.196, D.197, T.198, A.199, G.200, S.201, Y.328, R.336 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.154, A:A.199 Hydrogen bonds: A:G.153, A:G.153, A:T.198, A:A.199, A:G.200, A:S.201, A:Y.328 Water bridges: A:T.198, A:T.198 Salt bridges: A:K.103, A:R.336 MLI.2: 6 residues within 4Å: Chain A: T.223, S.224, G.225, V.226, P.228, R.231 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.225, A:V.226, A:V.226 Water bridges: A:R.231 Salt bridges: A:R.231 MLI.3: 13 residues within 4Å: Chain B: A.151, T.152, G.153, L.154, S.177, T.196, D.197, T.198, A.199, G.200, S.201, Y.328, R.336 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.154, B:A.199 Hydrogen bonds: B:A.151, B:G.153, B:G.153, B:T.198, B:A.199, B:G.200, B:S.201 Salt bridges: B:K.103, B:R.336 MLI.4: 6 residues within 4Å: Chain B: T.223, S.224, G.225, V.226, P.228, R.231 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.225, B:V.226 Water bridges: B:R.231 Salt bridges: B:R.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Y. et al., The Structure of Allophanate Hydrolase from Granulibacter bethesdensis Provides Insights into Substrate Specificity in the Amidase Signature Family. Biochemistry (2013)

Release Date

2013-01-30

Peptides

Allophanate hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Allophanate hydrolase

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