SMTL ID : 4gz2.1

Mus Musculus Tdp2 excluded ssDNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: W.180, Q.190, R.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.190, A:R.210 FMT.4: 2 residues within 4Å: Chain C: D.42, R.84 No protein-ligand interaction detected (PLIP)

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 3 residues within 4Å: Chain A: D.18, E.48 Chain B: T.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.18, A:E.48, H2O.3, H2O.3, H2O.4 MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain C: D.18, E.48 Chain D: T.3 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.18, C:E.48, H2O.11, H2O.11, H2O.13 MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., Mechanism of repair of 5'-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-10-31

Peptides

Tyrosyl-DNA phosphodiesterase 2: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

Tyrosyl-DNA phosphodiesterase 2