SMTL ID : 4gz7.1 (1 other biounit)

The crystal structure of Apo-dihydropyrimidinase from Tetraodon nigroviridis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.1: 10 residues within 4Å: Chain A: H.65, L.68, K.155, H.244, M.293, G.294, D.322, N.343, G.344 Ligands: MHA.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.294, A:N.343 Water bridges: A:K.155, A:K.155, A:H.188, A:D.322, A:D.322, A:N.343, A:V.345 Salt bridges: A:H.63, A:H.65, A:H.65, A:K.155, A:K.155, A:H.244, A:D.322 MHA.2: 10 residues within 4Å: Chain A: F.70, Y.160, F.164, G.294, T.339, I.341, P.342, N.343 Ligands: MHA.1, MHA.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.160, A:G.294, A:I.341, A:N.343, A:N.343 Water bridges: A:Y.160 MHA.3: 9 residues within 4Å: Chain A: I.195, A.199, H.213, C.216, R.217, F.338, T.339, N.343 Ligands: MHA.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.213, A:R.217, A:N.343 Water bridges: A:K.200 Salt bridges: A:H.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsien, Y.C. et al., Lysine Carboxylation: Metal and Structure Requirements for Post-translational Modification. To be Published

Release Date

2013-09-11

Peptides

dihydropyrimidinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

dihydropyrimidinase

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